Variables

4291 variables.
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Module Label Name Description Type
Whole-exome sequencing raw data (CHRIS baseline) x0gn51 Alignments GRCh37 (bam) Alignments GRCh37 (bam) Boolean
Whole-exome sequencing raw data (CHRIS baseline) x0gn52 Alignments GRCh38 (bam) Alignments GRCh38 (bam) Boolean
Whole-exome sequencing raw data (CHRIS baseline) x0gn53 Alignments T2T-CHM13 (bam) Alignments T2T-CHM13 (bam) Boolean
Whole-exome sequencing imputation (CHRIS baseline) x0gn04 WES-imputed genotype data CHRISGT and Minimac-imputed variants using custom CHRIS WES reference panel (aligned to GRCh37) Boolean
Whole-exome sequencing imputation (CHRIS baseline) x0gn41 WES imputed variants GRCh37 (vcf) WES imputed variants GRCh37 (vcf) Boolean
Whole-exome sequencing (CHRIS baseline) x0gn31 WES variant calls GRCh37 (vcf) WES variant calls GRCh37 (vcf) Boolean
Whole-exome sequencing (CHRIS baseline) x0gn32 WES variant calls GRCh38, lifted from GRCh37 (vcf) WES variant calls GRCh38, lifted from GRCh37 (vcf) Boolean
Urine (CHRIS baseline) x0br22 Urine Post-centrifugation Sample obtained from urine collected in sterile container after centrifugation. Boolean
TOPMed-imputed genotypes (CHRIS baseline) - NOT IN USE x0gn03 TOPMed-imputed genotype data CHRISGT and Minimac-imputed variants using the TOPMed reference panel (aligned to GRCh38) Boolean
Saliva (CHRIS baseline) x0br31 Saliva Sample obtained from an all-in-one collection kit containing DNA stabiliser as additive. Boolean
Restless Legs Syndrome (CHRIS baseline) x0rd10 Positive at Restless Legs Syndrome Positively screened for RLS in the last month Boolean
Public imputation panels (CHRIS baseline) x0gn21 HRC imputed genotypes (vcf) HRC imputed genotypes (vcf) Boolean
Public imputation panels (CHRIS baseline) x0gn23 TOPMed imputed genotypes (vcf) TOPMed imputed genotypes (vcf) Boolean
Parkinson screening (CHRIS baseline) x0pk13a Positive at Parkinson 9+2 questionnaire Positive at Parkinson 9+2 questionnaire Boolean
Parkinson screening (CHRIS baseline) x0pk13 Positive at Parkinson 9+2 questionnaire, all answers available Positive at Parkinson 9+2 questionnaire, all answers available Boolean
Olfactory test (CHRIS baseline) x0ol01a Sniffin Stick #1 (Orange) Correct identification Sniffin'Stick #1 (Orange) Boolean
Olfactory test (CHRIS baseline) x0ol10a Sniffin Stick #10 (Coffee) Correct identification Sniffin'Stick #10 (Coffee) Boolean
Olfactory test (CHRIS baseline) x0ol11a Sniffin Stick #11 (Apple) Correct identification Sniffin'Stick #11 (Apple) Boolean
Olfactory test (CHRIS baseline) x0ol12a Sniffin Stick #12 (Clove) Correct identification Sniffin'Stick #12 (Clove) Boolean
Olfactory test (CHRIS baseline) x0ol13a Sniffin Stick #13 (Pineapple) Correct identification Sniffin'Stick #13 (Pineapple) Boolean
Olfactory test (CHRIS baseline) x0ol14a Sniffin Stick #14 (Rose) Correct identification Sniffin'Stick #14 (Rose) Boolean
Olfactory test (CHRIS baseline) x0ol15a Sniffin Stick #15 (Anis) Correct identification Sniffin'Stick #15 (Anis) Boolean
Olfactory test (CHRIS baseline) x0ol16a Sniffin Stick #16 (Fish) Correct identification Sniffin'Stick #16 (Fish) Boolean
Olfactory test (CHRIS baseline) x0ol02a Sniffin Stick #2 (Leather) Correct identification Sniffin'Stick #2 (Leather) Boolean
Olfactory test (CHRIS baseline) x0ol03a Sniffin Stick #3 (Cinnamon) Correct identification Sniffin'Stick #3 (Cinnamon) Boolean
Olfactory test (CHRIS baseline) x0ol04a Sniffin Stick #4 (Peppermint) Correct identification Sniffin'Stick #4 (Peppermint) Boolean
Olfactory test (CHRIS baseline) x0ol05a Sniffin Stick #5 (Banana) Correct identification Sniffin'Stick #5 (Banana) Boolean
Olfactory test (CHRIS baseline) x0ol06a Sniffin Stick #6 (Lemon) Correct identification Sniffin'Stick #6 (Lemon) Boolean
Olfactory test (CHRIS baseline) x0ol07a Sniffin Stick #7 (Liquorice) Correct identification Sniffin'Stick #7 (Liquorice) Boolean
Olfactory test (CHRIS baseline) x0ol08a Sniffin Stick #8 (Turpentine) Correct identification Sniffin'Stick #8 (Turpentine) Boolean
Olfactory test (CHRIS baseline) x0ol09a Sniffin Stick #9 (Garlic) Correct identification Sniffin'Stick #9 (Garlic) Boolean
Occupation (CHRIS baseline) x0oc02l 1st occupation (seasonal) Occupation #1: seasonal Boolean
Occupation (CHRIS baseline) x0oc03l 2nd occupation (seasonal) Occupation #2: seasonal Boolean
Occupation (CHRIS baseline) x0oc04l 3rd occupation (seasonal) Occupation #3: seasonal Boolean
Occupation (CHRIS baseline) x0oc05l 4th occupation (seasonal) Occupation #4: seasonal Boolean
Occupation (CHRIS baseline) x0oc06l 5th occupation (seasonal) Occupation #5: seasonal Boolean
Occupation (CHRIS baseline) x0oc07l 6th occupation (seasonal) Occupation #6: seasonal Boolean
Neurological phenotypes (CHRIS baseline) x0nd0013 Any Migraine Any Migraine Boolean
Neurological phenotypes (CHRIS baseline) x0nd0017 Any headache Any headache Boolean
Neurological phenotypes (CHRIS baseline) x0nd0017a Any headache, Interview V2 Any headache, Interview V2 Boolean
Neurological phenotypes (CHRIS baseline) x0nd0013a Any migraine with N02C Drugs Any migraine with N02C Drugs Boolean
Neurological phenotypes (CHRIS baseline) x0nd0003a Cervical back pain (neck pain) Cervical back pain (neck pain) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0003b Cervical back pain (neck pain) with painkillers Cervical back pain (neck pain) with painkillers Boolean
Neurological phenotypes (CHRIS baseline) x0nd0003c Cervical back pain (neck pain) with prescribed/GP recommended painkillers Cervical back pain (neck pain) with prescribed/GP recommended painkillers Boolean
Neurological phenotypes (CHRIS baseline) x0nd0003d Cervical back pain controls (absence of neck pain) Cervical back pain controls (absence of neck pain) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0015 Cluster headache Cluster headache Boolean
Neurological phenotypes (CHRIS baseline) x0nd0001a Dorsalgia (backpain in general, unspecified localization) Dorsalgia (backpain in general, unspecified localization) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0001d Dorsalgia controls (absence of back pain) Dorsalgia controls (absence of back pain) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0001b Dorsalgia with painkillers Dorsalgia with painkillers Boolean
Neurological phenotypes (CHRIS baseline) x0nd0001c Dorsalgia with prescribed/GP recommended painkillers Dorsalgia with prescribed/GP recommended painkillers Boolean
Neurological phenotypes (CHRIS baseline) x0nd0085 Dysarthria (any cause, Interview V2) Dysarthria (any cause, Interview V2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0085a Dysarthria (excluding the most common cause-stroke, Interview V2) Dysarthria (excluding the most common cause-stroke, Interview V2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0085d Dysarthria controls (no dysarthria of any cause, Interview V2) Dysarthria controls (no dysarthria of any cause, Interview V2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0031a Epilepsy (positive at question) Epilepsy (positive at question) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0031b Epilepsy and consuming Anti-EPI drugs Epilepsy and consuming Anti-EPI drugs Boolean
Neurological phenotypes (CHRIS baseline) x0nd0042 Essential Tremor (secondary causes excluded) Essential Tremor (secondary causes excluded) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0084 Hemiplegia (any cause, Interview V2) Hemiplegia (any cause, Interview V2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0084a Hemiplegia (excluding the most common cause-stroke, Interview V2) Hemiplegia (excluding the most common cause-stroke, Interview V2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0084d Hemiplegia controls (no hemiplegia of any cause, Interview V2) Hemiplegia controls (no hemiplegia of any cause, Interview V2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0016 Hypnic headache Hypnic headache Boolean
Neurological phenotypes (CHRIS baseline) x0nd0073 Insomnia (hierarchical approach) Insomnia (hierarchical approach) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0073a Insomnia (hierarchical approach, Interview V1) Insomnia (hierarchical approach, Interview V1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0071 Insomnia (trasversal approach 1) Insomnia (trasversal approach 1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0071a Insomnia (trasversal approach 1, Interview V1) Insomnia (trasversal approach 1, Interview V1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0072 Insomnia (trasversal approach 2) Insomnia (trasversal approach 2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0072a Insomnia (trasversal approach 2, Interview V1) Insomnia (trasversal approach 2, Interview V1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0074 Insomnia controls Insomnia controls Boolean
Neurological phenotypes (CHRIS baseline) x0nd0074a Insomnia controls (Interview V1) Insomnia controls (Interview V1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0005b Joint pain (hierarchical approach) Joint pain (hierarchical approach) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0005a Joint pain (transversal approach) Joint pain (transversal approach) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0005d Joint pain controls Joint pain controls Boolean
Neurological phenotypes (CHRIS baseline) x0nd0006d Joint pain controls, Interview V1 Joint pain controls, Interview V1 Boolean
Neurological phenotypes (CHRIS baseline) x0nd0006a Joint pain with drugs, Interview V1 Joint pain with drugs, Interview V1 Boolean
Neurological phenotypes (CHRIS baseline) x0nd0006b Joint pain without drugs, Interview V1 Joint pain without drugs, Interview V1 Boolean
Neurological phenotypes (CHRIS baseline) x0nd0002a Lumbosacral back pain (lower back pain) Lumbosacral back pain (lower back pain) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0002b Lumbosacral back pain (lower back pain) with painkillers Lumbosacral back pain (lower back pain) with painkillers Boolean
Neurological phenotypes (CHRIS baseline) x0nd0002c Lumbosacral back pain (lower back pain) with prescribed/GP recommended painkillers Lumbosacral back pain (lower back pain) with prescribed/GP recommended painkillers Boolean
Neurological phenotypes (CHRIS baseline) x0nd0002d Lumbosacral back pain controls (absence of lower back pain) Lumbosacral back pain controls (absence of lower back pain) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0019 Migraine controls (broad, no symptoms of headache of clinical relevance) Migraine controls (broad, no symptoms of headache of clinical relevance) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0018 Migraine controls (more strict, no symptoms of headache) Migraine controls (more strict, no symptoms of headache) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0012 Migraine with aura Migraine with aura Boolean
Neurological phenotypes (CHRIS baseline) x0nd0012a Migraine with aura and drugs for attack Migraine with aura and drugs for attack Boolean
Neurological phenotypes (CHRIS baseline) x0nd0012b Migraine with aura and drugs for attack/prevention Migraine with aura and drugs for attack/prevention Boolean
Neurological phenotypes (CHRIS baseline) x0nd0011 Migraine without aura Migraine without aura Boolean
Neurological phenotypes (CHRIS baseline) x0nd0011a Migraine without aura and drugs for attack Migraine without aura and drugs for attack Boolean
Neurological phenotypes (CHRIS baseline) x0nd0011b Migraine without aura and drugs for attack/prevention Migraine without aura and drugs for attack/prevention Boolean
Neurological phenotypes (CHRIS baseline) x0nd0008b Multisite Chronic Pain at two or more body sites Multisite Chronic Pain at two or more body sites Boolean
Neurological phenotypes (CHRIS baseline) x0nd0055 Parkinson diseae controls (no diagnosis) Parkinson diseae controls (no diagnosis) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0052 Parkinson disease (hierarchical approach 1) Parkinson disease (hierarchical approach 1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0052a Parkinson disease (hierarchical approach 1a) Parkinson disease (hierarchical approach 1a) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0052b Parkinson disease (hierarchical approach 1b) Parkinson disease (hierarchical approach 1b) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0053 Parkinson disease (hierarchical approach 2) Parkinson disease (hierarchical approach 2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0053a Parkinson disease (hierarchical approach 2a) Parkinson disease (hierarchical approach 2a) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0053b Parkinson disease (hierarchical approach 2b) Parkinson disease (hierarchical approach 2b) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0054 Parkinson disease (hierarchical approach 3) Parkinson disease (hierarchical approach 3) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0054a Parkinson disease (hierarchical approach 3a) Parkinson disease (hierarchical approach 3a) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0054b Parkinson disease (hierarchical approach 3b) Parkinson disease (hierarchical approach 3b) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0051a Parkinson disease (transversal approach 1) Parkinson disease (transversal approach 1) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0051b Parkinson disease (transversal approach 2) Parkinson disease (transversal approach 2) Boolean
Neurological phenotypes (CHRIS baseline) x0nd0051c Parkinson disease (transversal approach 3) Parkinson disease (transversal approach 3) Boolean
4291 variables.